Preheat the oven to 350 F and fill a muffin tin with cupcake papers.
In a bowl, mix together the flour, ground almonds, flaxseed, baking powder, salt, and spices. Set it aside.
In a medium bowl mix together the almond milk, eggs, oil, honey and brown sugar.
Pour in the dry ingredients and stir lightly with a wooden spoon until the dry ingredients are half combined with the wet. Add the grated pear and fully stir together the wet and dry ingredients. The batter should remain lumpy.
Using a large spoon or an ice cream scoop, fill the cupcake papers. Top with flaked almonds if desired.
Bake for 20-22 minutes or until a toothpick comes out clean when inserted in the center of a muffin.
Best if served that day. Makes 12.